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Gdańsk University of Technology

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DNA methylation as a mediator of HLA-DRB1*15:01 and a protective variant in multiple sclerosis

The human leukocyte antigen (HLA) haplotype DRB1*15:01 is the major risk factor for multiple sclerosis (MS). Here, we find that DRB1*15:01 is hypomethylated and predominantly expressed in monocytes among carriers of DRB1*15:01. A differentially methylated region (DMR) encompassing HLA-DRB1 exon 2 is particularly affected and displays methylation-sensitive regulatory properties in vitro. Causal inference and Mendelian randomization provide evidence that HLA variants mediate risk for MS via changes in the HLA-DRB1 DMR that modify HLA-DRB1 expression. Meta-analysis of 14,259 cases and 171,347 controls confirms that these variants confer risk from DRB1*15:01 and also identifies a protective variant (rs9267649, p < 3.32 × 10-8, odds ratio = 0.86) after conditioning for all MS-associated variants in the region. rs9267649 is associated with increased DNA methylation at the HLA-DRB1 DMR and reduced expression of HLA-DRB1, suggesting a modulation of the DRB1*15:01 effect. Our integrative approach provides insights into the molecular mechanisms of MS susceptibility and suggests putative therapeutic strategies targeting a methylation-mediated regulation of the major risk gene.

Authors

  • Lara Kular,
  • Yun Liu,
  • Sabrina Ruhrmann,
  • Galina Zheleznyakova,
  • Francesco Marabita,
  • David Gomez-Cabrero,
  • Tojo James,
  • Ewoud Ewing,
  • Magdalena Lindén,
  • dr inż. Bartosz Górnikiewicz link open in new tab ,
  • Shahin Aeinehband,
  • Pernilla Stridh,
  • Jenny Link,
  • Till Andlauer,
  • Christiane Gasperi,
  • Heinz Wiendl,
  • Frauke Zipp,
  • Ralf Gold,
  • Björn Tackenberg,
  • Frank Weber,
  • Bernhard Hemmer,
  • Konstantin Strauch,
  • Stefanie Heilmann-Heimbach,
  • Rajesh Rawal,
  • Ulf Schminke,
  • Carsten Schmidt,
  • Tim Kacprowski,
  • Andre Franke,
  • Matthias Laudes,
  • Alexander Dilthey,
  • Elisabeth Celius,
  • Helle Søndergaard,
  • Jesper Tegnér,
  • Hanne Harbo,
  • Annette Oturai,
  • Sigurgeir Olafsson,
  • Hannes Eggertsson,
  • Bjarni Halldorsson,
  • Haukur Hjaltason,
  • Elias Olafsson,
  • Ingileif Jonsdottir,
  • Kari Stefansson,
  • Tomas Olsson,
  • Fredrik Piehl,
  • Tomas Ekström,
  • Ingrid Kockum,
  • Andrew Feinberg,
  • Maja Jagodic